FBI Agent Seely Booth enlists the help from the Jefferson's Institute's forensic anthropology team led by Dr. Temperance Brennan. With her help, Booth solves crimes by analyzing the remains of the murdered. The pair compliment each other with Booth having a humanist approach to cases while Brennan is scientific and logical. The Institute director and archaeologist, Dr. Camille Saroyan, also assists in cases. Facial Reconstructionist, Angela Montenegro, and entomologist, Dr. Jack Hodgins, also lend a hand. On the show, sexual tensions rise and friendships form all while the team solves cases.

While in London for a conference, Booth and Bones try to solve the murder of the daughter of an American businessman. Meanwhile, Angela's husband surfaces.

Booth and Bones investigate the remains of a reality TV host found in an outhouse after an explosion. The two must narrow down the long list of people who wanted the host dead.

Booth's son Parker discovers a human finger in a bird's nest. The team searches for the rest of the body and come across an illegal dog fighting ring.

The team investigates a headless body found in a purple pond. Sweets is able to find some suspects, but the team turns to a former detective for extra help.

Bones and Booth investigate a death in a office, tensions at the Jeffersonian rise between Angela and Hodgins, and the new guy, Fisher, tries to find his purpose in life.

Half of a skeleton washes ashore and the team investigates, Bones and Booth argue about religion, and a new intern helps with the case.

A body is discovered inside a piece of art and the Bones team has to figure out what happened without disturbing the piece. The team also finds out more about Angela and Sweets.

Clark is back and still doesn't care about anybody's personal lives, he just wants to solve the mystery of a man blown up in a meth lab. The team also meets Booth's brother, Jared.

Booth accompanies Bones on a trip to China where she is to participate in an archeological study, but her plans change when a body is found in the oven aboard the plane.

Bones and Booth investigate the murder involving the nanny of a wealthy family. Bones also finds out news about her father.

A skeleton of conjoined twins surfaces in the desert and Booth and Bones go undercover to solve the case.

A frozen body is discovered and Booth becomes a suspect in the man's murder. FBI Agent Payton Perotta is called upon to help solve the case.

Bones gets a call from The Gravedigger and the team learns he has Booth. Meanwhile, evidence from the previous Gravedigger case has gone missing.

Bones and Perotta investigate the murder of a fantasy convention booth babe.

The team investigates a body found by a bungee jumping couple that oozes a mysterious green foam.

Booth and Bones investigate a body found in a mound of salt which leads them to discover a shocking high school secret. Meanwhile, Angela and Roxie's relationship is in trouble.

Camille's former fiancée’s dead body is discovered at the zoo and the team investigates. Meanwhile, Angela takes a vow of celibacy.

The team investigates a mysterious bag of human remains that was uncovered during a photo shoot and Angela's father is in town to confront Hodgins.

Booth and Bones investigate an unfaithful fiance and discover information that leads them to suspect that Sweets' girlfriend is cheating on him.

A prop from a death metal show turns out to be a real skeleton and the team investigates. Also, Dr. Gordon Wyatt is back to help Sweets write his book on Booth and Bones.

The team goes to a colleague's funeral and when Bones notices that the dearly departed was actually murdered, the team struggles to investigate.

Booth gets a call from an old friend asking for help to find his missing sister. The team must race against the clock when they discover her roommate is missing as well.

Booth and Bones investigate the death of Jimmy 'Beaver' Bouvier who was found dead inside the costume of his college mascot, an otter.

The team investigates the body of a food critic found inside a wine barrel at a wine tasting event. Meanwhile, Bones contemplates having a baby.

This episode presents an alternate reality where Booth and Bones are married and own a nightclub. Camille and Jared arrive at the bar to investigate a murder.

Bones returns from her vacation just as Booth is cleared for duty after his recovery from his coma. A psychic, played by Cyndi Lauper, leads the team to a burial site while helping Booth navigate his romantic feelings with Bones.

The team investigates the murder of a super spy who stole a briefcase full diamonds. Meanwhile, Wendall loses his intern scholarship and learns he will have to leave the institute.

Bones and the team investigates the death of a Amish boy turned piano prodigy while Cam deals with talking to her foster child about sex.

Man found burnt to a crisp in a luau pit brings the team to a suburb where the residents are not very neighborly. Meanwhile, Parker tries to enlist women to be Booth's girlfriend.

The discovery of an ancient mummy results in the team investigating both a thousand year old and a recent murder. Meanwhile, Bones goes on a date with Booth's boss.

The team investigates remains that seem to belong to a being that is half man and half chicken.

The team discovers a green skeletal remains which belonged to a wrestler called the Iron Leprechaun. Meanwhile, the team enlists Gordon to help Booth find out why he can't shoot staight.

The team investigates a burned body found in a house up for sale. Meanwhile, Booth's grandfather Hank moves in after leaving his nursing home.

The team investigates the death of a video gamer found in a vat of grease. Hodgins, Sweets and Colin line up to watch the premiere of Avatar.

The team investigates the explosive death of a Santa after a botched bank robbery. Bones has an unexpected visitor for the holidays. Guest starring Zooey Deschanel.

The team travels to Roswell to investigate what appears to be an alien body. Wendell and Angela decide to tell Hodgins about their romantic relationship.

The lab is in lockdown and asked to find the cause of death of JFK. Hodgins tells Angela he will be there for her after she discovers she is pregnant.

The team investigates the death of a gay dentist. Jared introduces his potential fiance, but Booth discovers she used to be an escort.

The team investigates a dead body that resembles the devil. Cam wonders if Arastoo considers America as the Great Satan.

The team investigates a dead blind man found in the subway after an earthquake. Bones is interviewed about her book. Sweets makes a bold decision.

Bones and Booth tells Sweets about the first case they worked on together.

Just before her reunion, Bones travels to her home town to investigate a death she suspects was caused by a killer when she was in high school. Wendell learns that Angela thought she was pregnant.